Special

GgaEX0011295 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr2:17917745-17942977:-
Coord C1 exon
chr2:17942898-17942977
Coord A exon
chr2:17928687-17928741
Coord C2 exon
chr2:17917745-17917854
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTTTTGCTTTTTTTTCCTAGAGA
3' ss Score
8.78
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CTTGCTATGGAATTGTTCAAGTACCCACTGGACCCTGGTTCTGCAGAAAGTGTGAATCTCAGGAAAGAGCGGCCAGAGTG
Seq A exon
AGATGTGAATTATGCCCTCATAAGGATGGTGCTTTAAAGAGAACAGATAATGGGG
Seq C2 exon
GTTGGGCTCATGTGGTTTGTGCTCTGTACATTCCCGAGGTGCAGTTTGCGAATGTCGCTACAATGGAACCTATTGTGTTGCAGTCCGTTCCTCATGATCGTTATAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX1-2/21=1-3
Average complexity
S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF138311=PHD_2=PD(48.6=66.7),PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
A:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
C2:
PF138321=zf-HC5HC2H_2=FE(37.5=100),PF099474=DUF2180=PU(0.1=0.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCTGGTTCTGCAGAAAG
R:
GAGGAACGGACTGCAACACAA
Band lengths:
144-199
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]