BtaEX0022814 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009924 | MR1
Description
Bos taurus major histocompatibility complex, class I-related (MR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001190298]
Coordinates
chr16:63641808-63654100:+
Coord C1 exon
chr16:63641808-63641895
Coord A exon
chr16:63652906-63653166
Coord C2 exon
chr16:63653825-63654100
Length
261 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTGCCTCTCTCGCAGGGA
3' ss Score
10.87
5' ss Seq
CAGGTGGTG
5' ss Score
1.16
Exon sequences
Seq C1 exon
AAGAATCAGAAGAGAAGGATTTTAGAGGGGCTGATGATGCTCCTATTGCCTCTCATCATTGTATTAATGATGAAGCTCAGCGATGCTC
Seq A exon
GGACTCACTCTCTGAGATATTTTCGCCTGGGCATTTCAGAGCCTGGCTATGGGATCCCTGAATTTATTTCAGCCGGGTATGTGGATTCTCATCCCATCACCATGTACAACAGTGTGTCCCAGCTGAAGGAGCCGCGGGCCCTGTGGATGGAGGAAAACCTGGCACCTGATCACTGGGAGAGGTACACACAGCTGCTGCGGGGCTGGCAGCAGGCGTTCAAGGTGGAACTGAAGCAGCTGCAGCATCACTACAATCACTCAG
Seq C2 exon
GGTTTCACACTTACCAGAGAATGATTGGCTGTGAGTTACTGGAGGATGGAAGCATCACGGGATTTCTCCAATATGCATATGATGGACAGGATTTCCTTATCTTCAATAAAGATACCCTGTCCTGGATGGCCATGGATAATGTGGCTGACATCATCAGGCGGGTATGGGAGGCCAATCGGCATGAGTTACAATATCAGAAGAATTGGCTGGAAGAAGAATGCATTGCTTGGTTAAAGAGATTCCTGGAGTATGGGAAAGATGCCTTACAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009924_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(11.0=57.9)
A:
PF0012913=MHC_I=PU(49.4=98.9)
C2:
PF0012913=MHC_I=PD(50.0=94.6)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGAGGGGCTGATGATGCTC
R:
GCAATGCATTCTTCTTCCAGCC
Band lengths:
293-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development