RnoEX6044819 @ rn6
Exon Skipping
Gene
ENSRNOG00000003522 | Mr1
Description
major histocompatibility complex, class I-related [Source:RGD Symbol;Acc:1593291]
Coordinates
chr13:72779706-72789841:-
Coord C1 exon
chr13:72789684-72789841
Coord A exon
chr13:72780798-72781058
Coord C2 exon
chr13:72779706-72779981
Length
261 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTGCCTCCTCCTCAGGGA
3' ss Score
10.17
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
CGGTAGAGTGAGTACAGGTTCTCACAAAAGATTCATCAGGGGCCTGTCACTATCTGAAGTTTAAAAAAAAAAAATGGGAAGAAAAGGACTTCAGTGGGGGTTGATGATGTTCCTGCTACCGTTCCTCACAGTATTTTTGGCGAAGCAAAGCCATACCC
Seq A exon
GGACCCACTCTCTGAGATACTTTCGTCTGGCTATTTCGGATCCTGGCCCTGGAGTCCCTGAATTTATCTCAGTTGGGTATGTGGACTCACACCCTATCACTACATACGACAGCGTCACCCGACAGAAGGAGCCAAGAGCCCCATGGATGGCGGAGAACCTGGCGCCTGACCACTGGGAGAGGTACACTCAGCTGCTAAGAGGCTGGCAGCGGACCTTCCAGACAGAGCTGAGGCACCTGCAGAGGCACTACAACCACTCAG
Seq C2 exon
GGCTTCACACCTACCAGAGAATGATCGGTTGTGAGTTGCTGGAAGACGGCAGCACCACAGGGTTTCTCCAGTATGCATATGATGGACAAGATTTCATTGTCTTCGATAAAGACACCCTCTCCTGGCTGGCTATGGATAATGTGGCTCACATCACCAAGCGAGCATGGGAGGCCAACCTGCATGAGTTGCAATACCAAAAGAACTGGCTAGAAGAAGAGTGCATTGCCTGGCTAAAGAGGTTCTTGGAGTATGGAAGTGATGCCCTAGAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003522-'0-3,'0-2,7-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.007
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
PF0012913=MHC_I=PU(49.4=98.9)
C2:
PF0012913=MHC_I=PD(50.0=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCATCAGGGGCCTGTCA
R:
ATGCTCGCTTGGTGATGTGAG
Band lengths:
295-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]