MmuEX0029604 @ mm9
Exon Skipping
Gene
ENSMUSG00000026471 | Mr1
Description
major histocompatibility complex, class I-related [Source:MGI Symbol;Acc:MGI:1195463]
Coordinates
chr1:156983705-156993910:-
Coord C1 exon
chr1:156993762-156993910
Coord A exon
chr1:156984644-156984904
Coord C2 exon
chr1:156983705-156983980
Length
261 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTGTCTCCTCCTCAGGGA
3' ss Score
10.91
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
TAGAGTACAAGTTCTCAAAAGATTCATCAGGGGTCTGTCACTGTCTGAGGTTAAAAAAAAAAATCGGAAAAGCAAAGGACTTCAGCACGGGTTGATGATGCTCCTGTTACCTCTGCTCGCTGTATTCTTGGTGAAGCGAAGCCATACTC
Seq A exon
GGACCCACTCGCTGAGATATTTTCGTCTAGCTGTTTCCGATCCTGGTCCCGTCGTCCCTGAATTTATCTCTGTTGGGTATGTGGACTCACACCCTATCACTACATACGACAGTGTCACTCGACAGAAGGAGCCGAAAGCTCCATGGATGGCAGAGAACCTGGCACCTGATCACTGGGAGAGGTACACTCAGCTGCTAAGGGGCTGGCAGCAGACATTCAAGGCGGAGCTGAGGCACCTACAGAGGCACTACAACCACTCAG
Seq C2 exon
GGCTTCACACCTACCAGAGAATGATTGGCTGTGAGTTGCTAGAAGATGGCAGCACCACAGGGTTTCTCCAGTATGCATATGATGGACAAGATTTCATCATCTTCAATAAAGACACCCTCTCCTGGTTGGCCATGGATTATGTGGCTCACATCACCAAGCAAGCATGGGAGGCCAACCTGCATGAGTTGCAATACCAAAAGAACTGGCTGGAAGAAGAATGCATTGCCTGGCTAAAGAGGTTCTTGGAATATGGAAGAGATACCCTAGAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026471-'0-2,'0-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.011
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
PF0012913=MHC_I=PU(49.4=98.9)
C2:
PF0012913=MHC_I=PD(50.0=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGTCTGTCACTGTCTGA
R:
CTCCCATGCTTGCTTGGTGAT
Band lengths:
292-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: