BtaEX0023108 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001393 | MTF2
Description
Bos taurus metal response element binding transcription factor 2 (MTF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046556]
Coordinates
chr3:50492836-50498678:-
Coord C1 exon
chr3:50498611-50498678
Coord A exon
chr3:50496963-50497133
Coord C2 exon
chr3:50492836-50492941
Length
171 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTTTTAAACTTTAGGTT
3' ss Score
8.83
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CTGGCAGACACACCAAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
Seq A exon
GTTTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTCAAAGCAGAGAAAGAACCTGAAGGAACCTCTCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTATATCTGAATCAAG
Seq C2 exon
GGAAGTAAGCAATGGCATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCACCTGGCCCGTATACAAGAAAAATGATTCAGAAAACTGCTGAGCCACCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001393-'23-17,'23-15,24-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.569 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGACACACCAAAATCTGA
R:
AAGGTGGCTCAGCAGTTTTCT
Band lengths:
171-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development