GgaEX1037345 @ galGal4
Exon Skipping
Gene
ENSGALG00000005911 | MTF2
Description
metal-response element-binding transcription factor 2 [Source:RefSeq peptide;Acc:NP_989839]
Coordinates
chr8:12943049-12944459:-
Coord C1 exon
chr8:12944392-12944459
Coord A exon
chr8:12943843-12944013
Coord C2 exon
chr8:12943049-12943157
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATGACTTTAAAATCATCTAGGTT
3' ss Score
6.03
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
CTGGCAGATACACCAAAATCTGAAAGATATGAGCATGTACTGGAGGCATTAAATGATTACAAGACCAT
Seq A exon
GTTTATGTCTGGAAAAGAAATAAAGAAAAAGAAGCATTTGTTTGGCTTGAGAATTCGTGTTCCTCCTGTGCCGCCAAATGCTGCTTTAAAGGCTGAGAAAGAGCCAGAAGGAACTTCTCATGAGTTCAAAATTAAAGGCAGAAAATCATCTAAACCAATCCCTGATGTGAG
Seq C2 exon
GGAATTAAGTAATGGTATAGAAAGAAAGGGGAAAAAAAAATCAGTAGGTCGTCCACCTGGTCCCTATACAAGAAAAATGATTCACAAAACTCCAGAGTCGTCTCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911-'21-19,'21-18,23-19
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.569 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000009507fB903
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAAAATCTGAAAGATATGAGCA
R:
AGAGGAGACGACTCTGGAGTT
Band lengths:
167-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]