MmuEX0029981 @ mm10
Exon Skipping
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108099119-108104125:+
Coord C1 exon
chr5:108099119-108099186
Coord A exon
chr5:108100813-108100983
Coord C2 exon
chr5:108104020-108104125
Length
171 bp
Sequences
Splice sites
3' ss Seq
CCTTCCATATGTATTTGCAGGTT
3' ss Score
9.21
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CTGGCAGACACACCCAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
Seq A exon
GTTTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTCAAAGCAGAGAAAGAACCAGAAGGAACATCCCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTACATCTGACTCAAG
Seq C2 exon
GGAAGTAAGCAATGGGATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCTCCTGGCCCATATACAAGAAAAATGATTCAAAAAACTGCTGAGCTACCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267_MULTIEX2-4/5=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.556 C2=0.931
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGACACACCCAAATCTG
R:
CAAAGGTAGCTCAGCAGTTTTT
Band lengths:
173-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types