BtaEX0023217 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003116 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr12:34186586-34188936:+
Coord C1 exon
chr12:34186586-34186720
Coord A exon
chr12:34187375-34187488
Coord C2 exon
chr12:34188804-34188936
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACTTTTAATTTTTATTGTAGCAT
3' ss Score
7.76
5' ss Seq
CGAGTGAGC
5' ss Score
5.16
Exon sequences
Seq C1 exon
GCTGCCATTTGTCGCTGTAGTCAGCCACTGTCTGGGTTCAGTGCCCGGTGCCTCGAAGATGAACATTTACTTCAGGCCATCAGCAAGGCCAACCCAGCCAACCGCTACATGTACGTCATGGACACCAGACCCAGA
Seq A exon
CATCGTGTGCAGAGCTGGTGGGCTACACAAAAGGACATTGGCAGAATTATAGTGAGGATTTCTTCAAAAATCTGGAATGATGAGAAAATAAGAGAAAGCGATGAGAAAAAGCGA
Seq C2 exon
CTGAATGCAATGGCCAACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCTAATATTAGATTTCAGTTTGTTGGAATTGAAAATATCCATGTCATGCGGTCCAGCCTTCAGAAATTATTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003116_MULTIEX2-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.033
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(9.7=100)
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
ENSBTAT00000004052fB4468
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCAGCCACTGTCTGGGTT
R:
AATTTCTGAAGGCTGGACCGC
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development