RnoEX0056452 @ rn6
Exon Skipping
Gene
ENSRNOG00000012918 | Mtmr6
Description
myotubularin related protein 6 [Source:RGD Symbol;Acc:1305378]
Coordinates
chr15:40584527-40587076:+
Coord C1 exon
chr15:40584527-40584661
Coord A exon
chr15:40585663-40585776
Coord C2 exon
chr15:40586944-40587076
Length
114 bp
Sequences
Splice sites
3' ss Seq
TATTTTGATTTTTATTATAGCTT
3' ss Score
6.46
5' ss Seq
CGAGTGAGC
5' ss Score
5.16
Exon sequences
Seq C1 exon
GCTGCCATTTGTCGATGCAGTCAGCCATTGTCAGGCTTCAGTGCCAGGTGCCTAGAGGATGAGCATTTGCTTCAAGCCATTAGTAAAGCCAACCCAGGAAACCGCTACATGTATGTTGTGGATACCAGGCCCAAG
Seq A exon
CTTCGCATGCAGAGCTGGTGGGATACACAAAAGGACATTGGCAGAATTATAGTGAGGATTTCTTCAAAAATCTGGAATGATGAGAAAATAAGAGAAAGCGATGAGAAAAAGCGA
Seq C2 exon
CTCAATGCAATGGCTAACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCTAATATTAGATTTCAGTTTGTTGGAATAGAAAATATTCATGTCATGAGATCCAGCCTTCAGAAATTACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012918_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.022
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(19.8=100)
A:
PF066029=Myotub-related=FE(9.7=100)
C2:
PF066029=Myotub-related=FE(19.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATGCAGTCAGCCATTGTC
R:
TCTGAAGGCTGGATCTCATGACA
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]