MmuEX0030102 @ mm9
Exon Skipping
Gene
ENSMUSG00000021987 | Mtmr6
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60908380-60910963:+
Coord C1 exon
chr14:60908380-60908514
Coord A exon
chr14:60909543-60909656
Coord C2 exon
chr14:60910831-60910963
Length
114 bp
Sequences
Splice sites
3' ss Seq
TATTTTGATTTTTATTATAGCAT
3' ss Score
6.29
5' ss Seq
CGAGTGAGC
5' ss Score
5.16
Exon sequences
Seq C1 exon
GCTGCCATTTGTCGATGTAGTCAGCCATTGTCAGGCTTCAGTGCCAGGTGCCTAGAGGATGAGCATTTGCTTCAAGCCATTAGTAAAGCCAACCCAGGAAACCGCTACATGTATGTTGTGGATACCAGGCCCAAG
Seq A exon
CATCGCATGCAGAGCTGGTGGGATACACAAAAGGACATTGGCAGAATTATAGTGAGGATTTCTTCAAAAATCTGGAATGATGAGAAAATAAGAGAAAGCGATGAGAGAAAGCGA
Seq C2 exon
CTCAATGCAATAGCTAACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCTAATATTAGATTTCAGTTCGTTGGAATAGAAAATATTCATGTCATGAGATCCAGCCTTCAGAAATTACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(9.7=100)
C2:
PF066029=Myotub-related=FE(12.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTAGTCAGCCATTGTCAGGC
R:
TCTGAAGGCTGGATCTCATGACA
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: