BtaEX0023220 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010372 | MTMR7
Description
Bos taurus myotubularin related protein 7 (MTMR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001075641]
Coordinates
chr27:18983575-19002725:+
Coord C1 exon
chr27:18983575-18983709
Coord A exon
chr27:18992877-18993009
Coord C2 exon
chr27:19002616-19002725
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGCTGCCCACTGCAGCTT
3' ss Score
7.7
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GCCTCCATCTGCCGGAGCAGCCAGCCCCTGTCTGGCTTCAGTGCCCGCTGCCTGGAGGATGAGCAGATGCTGCAGGCCATCAGGAAGGCCAACCCGGGAAGCGACTTCCTTTATGTTGTGGACACTCGGCCCAAG
Seq A exon
CTTAATGCGATGGCAAATCGTGCTGCAGGGAAAGGCTATGAGAACGAAGACAATTATTCCAATATCAAGTTTCAGTTTATCGGGATAGAGAACATCCATGTCATGAGGAACAGTCTGCAGAAAATGCTGGAAG
Seq C2 exon
TGTGTGAACTTAAATCTCCCTCCATGAGTGACTTTCTGTGGGGACTGGAGAACTCTGGCTGGTTGAGGCACATTAAGGCCATCATGGATGCAGGAATCTTCATTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010372_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(12.8=100)
C2:
PF066029=Myotub-related=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGCCCCTGTCTGG
R:
TTGCAATGAAGATTCCTGCATCC
Band lengths:
226-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development