MmuEX0030107 @ mm10
Exon Skipping
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:40563960-40587182:-
Coord C1 exon
chr8:40587048-40587182
Coord A exon
chr8:40581414-40581546
Coord C2 exon
chr8:40563960-40564069
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGCTGACAACTGCAGCTT
3' ss Score
5.71
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GCCTCCATCTGCAGGAGCAGCCAGCCCCTTTCCGGCTTCAGCGCTCGGTGCCTGGAGGATGAGCAGATGCTCCAAGCCATCAGGAAAGCCAATCCTGGAAGTGACTTCATTTATGTCGTGGACACAAGGCCTAAA
Seq A exon
CTTAATGCGATGGCAAATCGTGCTGCAGGGAAAGGCTATGAGAATGAAGACAATTATTCCAATATCAAGTTTCAGTTTATCGGCATAGAGAACATCCACGTCATGAGGAACAGTCTTCAGAAAATGCTGGAAG
Seq C2 exon
TGTGTGAACTTAAATCTCCCTCTATGAGTGATTTCCTGTGGGGACTGGAGAACTCAGGCTGGCTGAGGCACATCAAAGCCATCATGGATGCAGGGATCTTCATTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(12.8=100)
C2:
PF066029=Myotub-related=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCATCTGCAGGAGC
R:
TGCAATGAAGATCCCTGCATCC
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types