GgaEX6035380 @ galGal4
Exon Skipping
Gene
ENSGALG00000013641 | MTMR7
Description
myotubularin related protein 7 [Source:HGNC Symbol;Acc:HGNC:7454]
Coordinates
chr4:62719733-62729006:+
Coord C1 exon
chr4:62719733-62719867
Coord A exon
chr4:62724765-62724897
Coord C2 exon
chr4:62728897-62729006
Length
133 bp
Sequences
Splice sites
3' ss Seq
AGTTTCTCTAATTTTTTCAGCTC
3' ss Score
7.25
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
GCCTCAATATGTAGGAGCAGCCAGCCTTTATCCGGCTTTAGTGCTAGATGCCTGGAAGATGAACAGATGCTTCAGGCCATCAGAAAAGCAAACCCAGGAAGTGATTTCATATATGTTGTTGACACTCGGCCCAAA
Seq A exon
CTCAATGCAATGGCAAACCGAGCAGCAGGGAAGGGATATGAAAATGAAGACAACTACTCCAACATCAAGTTTCAATTCATAGGCATTGAGAACATCCATGTCATGAGAAACAGCCTGCAGAAAATGCTTGAAG
Seq C2 exon
TTTGTGAAATGAAATCACCTTCAATGAGTGACTTCCTGTGGGGCCTTGAAAATTCTGGCTGGCTGAAGCATATCAAAGCCATTATGGATGCTGGCATCTTTATCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641-'16-11,'16-9,17-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(12.8=100)
C2:
PF066029=Myotub-related=FE(10.5=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCAATATGTAGGAGCAGCC
R:
TTTGCGATAAAGATGCCAGCA
Band lengths:
244-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]