BtaEX0023226 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000035705 | MTMR8
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:HGNC:16825]
Coordinates
chrX:101268820-101277666:+
Coord C1 exon
chrX:101268820-101268952
Coord A exon
chrX:101270230-101270339
Coord C2 exon
chrX:101277541-101277666
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCTTTTCTACCTTAGTTT
3' ss Score
8.28
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
TTAAATGCCTTGGCCAACCGAGCAGCTGGGAAGGGGTATGAAAATGAAGACAACTATGCCAACATTCGCTTCAGGTTCATGAGCATTGAGAACATCCATGTGATGCGGAGCAGCCTGCAGAAACTCTTGGAAG
Seq A exon
TTTGTGAATTGAAAACTCCAACAATGAGTGAATTTCTTAGCGGCCTGGAGAGCTCAGGGTGGTTGAGACACATTAAAGCTATTATGGATGCTGGAATTTTCATTGCAAAG
Seq C2 exon
GCAGTGAAGGTAGAAAAGACCAATGTCTTAGTCCATTGTTCTGATGGGTGGGACCGCACAGCACAAGTTTGCTCTGTGGCCAGCATCCTCCTAGATCCATTTTATAGGACATTCAAAGGACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035705_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.7=100)
A:
PF066029=Myotub-related=FE(10.4=100)
C2:
PF066029=Myotub-related=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAATGCCTTGGCCAACCGA
R:
TGTCCTATAAAATGGATCTAGGAGGA
Band lengths:
244-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development