DreEX0047925 @ danRer10
Exon Skipping
Gene
ENSDARG00000008592 | mtmr8
Description
myotubularin related protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1016]
Coordinates
chr5:21532515-21534366:-
Coord C1 exon
chr5:21534234-21534366
Coord A exon
chr5:21532728-21532837
Coord C2 exon
chr5:21532515-21532640
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTGTATCTGTGTTCCTCCAGTTT
3' ss Score
9.87
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
TTGAATGCAATGGCGAACCGTGCAGCTGGTAAAGGCTATGAGAACGAGGACAATTACTCCAATATCAGGTTCCAGTTTCAGGGAATTGAAAACATCCATGTCATGAGAAGCAGCCTGCAAAAACTGCTGGAGG
Seq A exon
TTTGCTCTATGAAGTCTCCCTCTATGAGTGACTATCTGACAGGACTGGAGAACTCTGGCTGGTTGAGACACATCAAATCTGTGATGGATGCAGGGGTCTTCCTCGCCAAG
Seq C2 exon
GCTGTGTGTGAAGAGAGAGCGAGTGTATTAGTACACTGTTCCGATGGTTGGGACAGAACTGCTCAGGTTTGCTCTCTGGCTTGCTTACTGCTGGATCCATACTACAGAACTATTAAAGGCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008592-'14-12,'14-11,16-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(10.5=100)
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAATGCAATGGCGAACCGT
R:
GTTCTGTAGTATGGATCCAGCAGT
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]