GgaEX1037513 @ galGal4
Exon Skipping
Gene
ENSGALG00000007590 | MTMR8
Description
myotubularin-related protein 8 [Source:RefSeq peptide;Acc:NP_001012717]
Coordinates
chr4:11592653-11597348:+
Coord C1 exon
chr4:11592653-11592785
Coord A exon
chr4:11594706-11594815
Coord C2 exon
chr4:11597299-11597348
Length
110 bp
Sequences
Splice sites
3' ss Seq
TATTTTGTTTGTGTTCTTAGTCT
3' ss Score
7.41
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
TTAAATGCCATGGCCAACCGAGCTGCTGGGAAGGGTTATGAGAACGAAGACAATTATGATAACATTCGCTTTAAATTTATTGGCATTGAAAACATCCATGTGATGCGGAGCAGCTTGCAGAAACTCCTGGAAG
Seq A exon
TCTGCGAAACAAAGTCTCCATCAATGAGTGATTTCCTTACTGGGCTGGAGAACTCAGGTTGGTTGCGGCACATAAAGGCTGTCGTGGATGCAAGTGTCTTTCTCGCAAAG
Seq C2 exon
GTCCTTATAGAAAAGGAGTGGATTGCAATGGGCCATAAGTTTTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007590_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(10.5=100)
C2:
PF066029=Myotub-related=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAATGCCATGGCCAACCGA
R:
GTGAAAACTTATGGCCCATTGCA
Band lengths:
179-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]