BtaEX0023581 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58194797-58208630:+
Coord C1 exon
chr10:58194797-58194904
Coord A exon
chr10:58204856-58204962
Coord C2 exon
chr10:58208365-58208630
Length
107 bp
Sequences
Splice sites
3' ss Seq
GGGAAACATTTTGTTTTCAGGTT
3' ss Score
6.57
5' ss Seq
AGCGTAAGA
5' ss Score
6.21
Exon sequences
Seq C1 exon
GGAGTGCAGAAGAATTTAATTATACGCGAATGGGGGGCAGCACGGTCCTTGAGGGTGTGAATGACAGAGCCGACATGATAGAGACTCAGAAGACCTTCACACTGCTGG
Seq A exon
GTTTCAAGGAAGATTTTCAGATGGACGTTTTTAAGGTTCTGGCGGCCATCCTACATCTGGGCAATGTACGGATTGCAGCAGTGGGCAACGAGAGATCAGTGATCAGC
Seq C2 exon
GAGGATGATGATCACCTGGAGGTGTTCTGTGAGCTCCTGGGCCTGGAGAGTGGCAGAGTCGCTCAGTGGCTGTGTAATCGCAAGATCGTCACAACCTCCGAGACAGTGGTGAAGCCCATGACCAGGCCCCAGGCTGTCAATGCCAGGGATGCACTGGCCAAAAAGATCTACGCTCACCTGTTTGACTACATTGTGGAGAGAATTAACCAAGCCTTGCAGTTTTCAGGCAAGCAGCACACTTTTATTGGTGTTTTGGACATTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763_MULTIEX1-7/27=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(5.2=100)
C2:
PF0006316=Myosin_head=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACCTTCACACTGCTGG
R:
GCCTGAAAACTGCAAGGCTTG
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development