DreEX0048726 @ danRer10
Exon Skipping
Gene
ENSDARG00000104235 | myo5c
Description
myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
Coordinates
chr25:4667740-4670738:+
Coord C1 exon
chr25:4667740-4667847
Coord A exon
chr25:4667929-4668035
Coord C2 exon
chr25:4670473-4670738
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCATCAATGTTTCTCTTCAGGTC
3' ss Score
10.27
5' ss Seq
GGTGTAAGA
5' ss Score
3.6
Exon sequences
Seq C1 exon
TGGGCGCAGAAAAGTTTAATTACACACGTTTGGGTGGTGAGATCGAGATCGAAGGTGTGGACGACCGTGCTGATATGGCAGAAACACGCAGAACCTTCAATCTACTGG
Seq A exon
GTCTCAAGGAAAACTTTCAGACTGACGTGTTTAAGGTGCTCGCCGCAATCCTGCATTTAGGAAATGTAATAATCAAGGCAAAGGACCCAGAGAAATCATTCATCGGT
Seq C2 exon
TCCAGAGACCCTCACCTGGCCATATTCTGCGACCTCATGGGCGTCAGCACGGAAAACATGAGCCGCTGGTTGTGTCATAGACGGATAGTCCTGTCAACAGAGACCGTAGTCAAACCGCAGCCCCGGGAACGTGCTGTCAATGCACGCGACGCTCTTGCTAAACACATCTACGCCCATCTTTTCAACTGGGTCATTCACAAAATCAACCACGCGCTGATGGTCCCTGGCAAACAGCATTCGTTTATTGGGGTCTTGGATATTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104235-'8-11,'8-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(5.2=100)
C2:
PF0006316=Myosin_head=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACGACCGTGCTGATATG
R:
CCCAGTTGAAAAGATGGGCGT
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]