RnoEX0057436 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82193959-82199297:+
Coord C1 exon
chr8:82193959-82194066
Coord A exon
chr8:82196765-82196871
Coord C2 exon
chr8:82199032-82199297
Length
107 bp
Sequences
Splice sites
3' ss Seq
GGGGAATGTTTACTTTGCAGGAT
3' ss Score
5.69
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
Exon sequences
Seq C1 exon
GGAGTGCAGAAGAGTTCAACTACACAAGAATGGGTGGGAACACTGTCATTGAAGGCGTCGATGACAGAGCTGACATGGCGGAGACCCAGAAGACCTTCACATTGCTGG
Seq A exon
GATTCAAGAAAGATTTTCAGATGGATGTTTTTAAGATCCTAGCTGCCATCCTGCATCTGGGCAATGTGCAGGTCACCACAGTGGGCAACGAGAGGTCTGCAGTCAGT
Seq C2 exon
GAGGATGACAGTCACCTGAAGGTGTTCTGTGAGCTCTTGGGCCTGGAGACTATCAAAGTGGCTCAGTGGCTATGCAACCGAAAAATAGTGACCTCCTCAGAAACTGTGGTGAAGCCCATGACCAGGCCTCAGGCCATCAATGCCAGGGACGCGCTGGCCAAAAAGATCTACGCTCACCTGTTCGACTTCATTGTAGAGCAAATCAATCAGGCATTGCACTTCTCAGGCAAGCAGCACACTTTTATTGGTGTTTTGGACATTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(5.2=100)
C2:
PF0006316=Myosin_head=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTCATTGAAGGCGTCGA
R:
AGTCGAACAGGTGAGCGTAGA
Band lengths:
255-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]