BtaEX0023596 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57406133-57409457:+
Coord C1 exon
chr15:57406133-57406238
Coord A exon
chr15:57408177-57408290
Coord C2 exon
chr15:57409370-57409457
Length
114 bp
Sequences
Splice sites
3' ss Seq
CAAGTGCCTCCCCGCACCAGGCC
3' ss Score
4.91
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AAATGGGTCCCGGAAGTACCCCCCACACTTGGTGGAGGTGGAAGCCATCCAGCACAAAACCACCCAGATTTTCCACAAGGTCTACTTTCCTGATGACACTGACGAG
Seq A exon
GCCTTTGAGGTGGAGTCCAGCACCAAGGCCAAGGACTTCTGCCAGAATATCGCCGCCCGGCTGCTCCTCAAGTCCTCCGAGGGATTCAGCCTCTTTGTCAAAATTGTAGATAAG
Seq C2 exon
GTCATCAGCGTCCCTGAGAATGACTTCTTCTTCGACTTTGTACGACATCTGACGGACTGGATAAAGAAAGCCCGGCCTGTCAGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'44-50,'44-49,45-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.5=22.2)
A:
PF093795=FERM_N=FE(39.4=100)
C2:
PF093795=FERM_N=FE(30.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGGTCCCGGAAGTACC
R:
CATCCCTGACAGGCCGGG
Band lengths:
194-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development