DreEX6063700 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3172658-3177481:+
Coord C1 exon
chr18:3172658-3172763
Coord A exon
chr18:3174893-3175006
Coord C2 exon
chr18:3177394-3177481
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTGTTATGGTGTGTTTCAGGCA
3' ss Score
9.15
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GAACGGCTCCAGGAAATATCCTCCTCACCTAGTGGAGGTGGAGGCCATTCAACACAAAACCACGCAGATCTTTCACAAGGTTTACTTCCCTGATGACACAGATGAG
Seq A exon
GCATTTGAGGTGGAGTCCAGCACAAAGGCTAAAGATTTCTGTCTGAACATCTCCAGCAGACTCTTACTCAAAACACCAGAAGGCTTTAGTCTGTTTGTCAAGATCTCTGACAAG
Seq C2 exon
GTGATCAGTGTGCCTGAGGGGGATTTCTTCTTCGACTTTGTCCGCCATTTGACCGATTGGATAAAGAAAGCAAGACCTGCTAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'46-44,'46-43,47-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.6=22.2)
A:
PF093795=FERM_N=FE(39.8=100)
C2:
PF093795=FERM_N=FE(31.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGCTCCAGGAAATATCC
R:
GGTCTTGCTTTCTTTATCCAATCGG
Band lengths:
183-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]