GgaEX6006890 @ galGal3
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198109549-198112412:-
Coord C1 exon
chr1:198112307-198112412
Coord A exon
chr1:198110697-198110810
Coord C2 exon
chr1:198109549-198109636
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTCCTTTCTTTGTAGGCA
3' ss Score
11.69
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAATGGGTCCAGAAAGTACCCTCCCCATCTTGTAGAAGTGGAAGCCATTCAACACAAAACCACCCAAATTTTCCACAAGGTTTACTTTCCTGATGACACTGATGAG
Seq A exon
GCATTTGAGGTGGAGTCTAGCACAAAAGCAAAGGATTTCTGCCAGAACATCTCCAACAGACTGCTCCTAAAGTCTTCTGAAGGCTTCAGCCTCTTTGTCAAGATCTCTGACAAG
Seq C2 exon
GTCATAAGTGTGCCCGAGGGAGATTTCTTCTTTGACTTTGTGAGACACCTGACGGACTGGATAAAGAAAGCAAGACCAGCAAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.6=22.2)
A:
PF093795=FERM_N=FE(39.8=100)
C2:
PF093795=FERM_N=FE(31.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGGTCCAGAAAGTACCCT
R:
CATCTTTTGCTGGTCTTGCTT
Band lengths:
194-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]