BtaEX0024182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44678972-44680095:+
Coord C1 exon
chr2:44678972-44679073
Coord A exon
chr2:44679199-44679306
Coord C2 exon
chr2:44679784-44680095
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTCATGTCTCTGTCTTTTAGTAT
3' ss Score
9.22
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATTAAGTACCGAAAAGATTGGAATGACACAAAATCAAAGTACACTCTCACAGAAACCCCTCAGCTGCATACTGCCCAGGAGGCAGCCCGGATACTGGACCAG
Seq A exon
TATCTCTACAAGGAAAGCTGGGAGAAACAGAAAGCCACCGGTTACATTTTGCCTCCAGATGCTGTGCCATTTGTTCATGCCCATCATTCTGGTGATGTTCAGAGTGAG
Seq C2 exon
CTGAAATACAAAGCTGAACACGTCAAGCAGAAAGGTCATTATGTGGGTGTCCCGACGATGAGAGATGATCCTAAACTGGTTTGGTTCGAGCACGCAGGCCAGATTCAGAATGACAGACTTTACAAAGAGAACTATCATAAGACAAAGGCCAAAATCCATATACCTCCTGATATGGTGTCGGTGTTGGCAGCCAAGGAGGGACAGGCCCTTGCCAGTGACATTGATTACCGCAATTACCTGCACCAATGGATATGTCACCCTGACCAAAATGATGTTATTCAGGCAAGGAAGGCCTATGACCTACAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907_MULTIEX5-54/55=53-55
Average complexity
S
Mappability confidence:
80%=77=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.056 C2=0.048
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=32.4),PF0088013=Nebulin=PU(55.2=47.1)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACAGAAACCCCTCAGCT
R:
CTGCCAACACCGACACCATAT
Band lengths:
248-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development