GgaEX6043278 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36855996-36857593:-
Coord C1 exon
chr7:36857492-36857593
Coord A exon
chr7:36857179-36857286
Coord C2 exon
chr7:36855996-36856307
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTCTATTTTCCACAGAGT
3' ss Score
10.86
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATTAAATACCACAAAGATTGGAATGAGGTTAAGTCAAATTATACTCTAACTGATACACCGCAGCTAGATATGGCACGAGAGGCGGCCAGAATTCTTAATCAG
Seq A exon
AGTTTATACAAGGAAAGCTGGGAGAAAGAGAAAGCCACTGGTTATCTCTTACCTCCTGACACTGTGCAGATCCGTCATGCCAAACACTCAAATGATGTCCAAAGTGAG
Seq C2 exon
CTTAAATACAAAGCTGACTATGTCAAACAAAGAGGTCACTACGTTGGAGTTGCCAGCATGAGAGATGATCCCAAACTGGTGTGGTTTGAACATGCAGGCGAGATCCAGAATGACAGATTGTATAAATCAAATTACCACAAAACAAAATCCAAAATTCACATCCCTGCTGATATTATGTCAGTTGTAGCAGCAAAAGAGTGTCAGGCATTGGTCAGTGATGTTGACTACCGCCATTACCTGCATCAGTGGACATGCCACCCTGACCAGAATGATTGTATTCAGGCAAGGAAGGCCTATGATCTGCAAAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'82-84,'82-83,83-84=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=32.4),PF0088013=Nebulin=PU(55.2=47.1)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(51.9=13.5)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCTAGATATGGCACGAG
R:
GCCTGACACTCTTTTGCTGCT
Band lengths:
250-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]