MmuEX6101268 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52209341-52210651:-
Coord C1 exon
chr2:52210550-52210651
Coord A exon
chr2:52210328-52210435
Coord C2 exon
chr2:52209341-52209652
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTGGCTCTTGGTCTTTTAGTAC
3' ss Score
8.35
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATTAAATATCGCAAAGATTGGAATGCCATCAAGTCAAAGTATACCCTTACAGAAACCCCACTGCTGCACACTGCCCAGGAGGCTGCCCGGATCCTGGACCAG
Seq A exon
TACCTCTACAAGGAAGGCTGGGAGAAACAGAAAGCCACAGGCTACATTCTGCCACCCGATGCTGTGCCATTCGTTCATGCCCATCATTCCAGCGATGTTCAAAGTGAG
Seq C2 exon
CTGAAATACAAAGCTGAGCACGTTAAGCAGCGAGGCCACTACGTTGGCGTTCCTACAATGAGAGACGATCCCAAGCTGGTTTGGTTTGAGCACGCAGGCCAGATTCAGAACGACAGGCTCTACAAGGAGAGCTACCATAAGTCAAAGGCCAAAATCAATATCCCTGCTGACATGGTGTCGGTTGTGGCCGCCAAGGAAGGGCAGAACCTTGTCAGTGACATCGATTACCGTCAATACCTACACCAGTGGACGTGCCACCCTGACCAAAATGATGTTATTCAGGCAAAAATTGCCTATGACCTTCAGAGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'106-113,'106-112,107-113=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.038
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=32.4),PF0088013=Nebulin=PU(55.2=47.1)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTACAGAAACCCCACTGC
R:
GCCACAACCGACACCATGTC
Band lengths:
247-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types