BtaEX0024823 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006686 | NPNT
Description
nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
Coordinates
chr6:20450525-20461071:-
Coord C1 exon
chr6:20460973-20461071
Coord A exon
chr6:20452494-20452584
Coord C2 exon
chr6:20450525-20451112
Length
91 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCGTTCTCTCTCTAGGTC
3' ss Score
14.74
5' ss Seq
AACGTGAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
GTGTTCTGATACACAGTTGTAATTTTGACCATGGGCTTTGTGGATGGATCCGGGAAAAAGACAGTGACGTGCACTGGGAACCAGTGAGGGATCCAGCAG
Seq A exon
GTCATCTTCAAAGGTGAAAAAAGGCATGGTCACACTGGGGAGATTGGATTGGATGATGTGAGCTTGAAAAAAGGCCACTGCTCTGAAGAAC
Seq C2 exon
GAATCACAAAGATGATTAAAGGGTTGGAAAAAAAGATCTATGATGAAAAGTTAAAGGAACTGGGATTATTCAGCATGGAGAAGAGAAGACTGAGGGGCAAACCATTGCTGGTTTTCAAGTATATAAAGGGTTGGTACAGAGAGGATGGTGACCAGCTGTTCTCCACATGCACTAAGAATAGAACAAGAGGAAACAGGCTTAGACTGGAGTGTGAGGGAGCGTTTCCTGGCAGGGACAATTGTTAAATTAGAATCTTTTGTTTTTAAAAAAAGTGTGAATTTTTTTGAGACTTTACAAAAATTTGATAACATTCTTTTCTATTAATTTAAGATGGTTAAAAGTGTTCTTACCTCAAGGTAGAGTAACAGATTACAGAATCTCTCCAAAGATACCTTGATTGTATTACTATGTAATGAAAATTTCCAGGCCTAAGTAACATGGACTTAAGCTAAGGTCTAACTGAGGTATTTCCCTCTTGGCCTCCGAATAGAGAGGAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006686_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.100 C2=NA
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(19.0=79.4)
A:
PF0062918=MAM=PD(19.7=93.3)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCATGGGCTTTGTGGATG
R:
TGGTTTGCCCCTCAGTCTTCT
Band lengths:
178-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development