MmuEX1018752 @ mm10
Exon Skipping
Gene
ENSMUSG00000040998 | Npnt
Description
nephronectin [Source:MGI Symbol;Acc:MGI:2148811]
Coordinates
chr3:132882183-132886012:-
Coord C1 exon
chr3:132885756-132886012
Coord A exon
chr3:132884501-132884513
Coord C2 exon
chr3:132882183-132882278
Length
13 bp
Sequences
Splice sites
3' ss Seq
TGTATACGTTCTCTCCCTAGGTC
3' ss Score
13.09
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
GTGGACAGTATCTCACAGTGTCTGCAGCCAAAGCCCCGGGGGGAAAAGCCGCTCGCTTGGTGTTACGTCTCGGCCACCTCATGCATTCAGGGGACCTGTGCCTGTCCTTTAGGCACAAGGTGACTGGGCTGCACTCGGGCACACTGCAGGTGTTTGTGAGGAAACACGGTACCCACGGAGCAGCCCTGTGGGGAAGAAATGGTGGCCATGGCTGGAGGCAAACCCAGATCACCTTGCGAGGGGCTGACGTCAAAAGC
Seq A exon
GTCATCTTCAAAG
Seq C2 exon
AGACCCCCAAGAAACATGAGGCAGAGAGAGCCTGTCTGGTGCATTGCCTGGCTTGCATTGACAAGTTAACATGGCTACTGAAGGTGTGTCAACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040998-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.148 C2=NA
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(60.7=100)
A:
PF0062918=MAM=PD(18.6=92.9)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGCAAACCCAGATCAC
R:
GTCAATGCAAGCCAGGCAATG
Band lengths:
108-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types