HsaEX1026047 @ hg38
Exon Skipping
Gene
ENSG00000168743 | NPNT
Description
nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
Coordinates
chr4:105967188-105971670:+
Coord C1 exon
chr4:105967188-105967444
Coord A exon
chr4:105968895-105968907
Coord C2 exon
chr4:105970385-105971670
Length
13 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCATTCTCTCCCTAGGTC
3' ss Score
13.56
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
GTGGACAATATCTGACAGTGTCGGCAGCCAAAGCCCCAGGGGGAAAAGCTGCACGCTTGGTGCTACCTCTCGGCCGCCTCATGCATTCAGGGGACCTGTGCCTGTCATTCAGGCACAAGGTGACGGGGCTGCACTCTGGCACACTCCAGGTGTTTGTGAGAAAACACGGTGCCCACGGAGCAGCCCTGTGGGGAAGAAATGGTGGCCATGGCTGGAGGCAAACACAGATCACCTTGCGAGGGGCTGACATCAAGAGC
Seq A exon
GTCGTCTTCAAAG
Seq C2 exon
GAATCACAAAGATGATTAAAGGGTTGGAAAAAAAGATCTATGATGGAAAATTAAAGGAACTGGGATTATTGAGCCTGGAGAAGAGAAGACTGAGGGGCAAACCATTGATGGTTTTCAAGTATATGAAGGGTTGGCACAGAGAGGGTGGCGACCAGCTGTTCTCCATATGCACTAAGAATAGAACAAGAGGAAACTGGCTTAGACTAGAGTATAAGGGAGCATTTCTTGGCAGGGGCCATTGTTAGAATACTTCATAAAAAAAGAAGTGTGAAAATCTCAGTATCTCTCTCTCTTTCTAAAAAATTAGATAAAAATTTGTCTATTTAAGATGGTTAAAGATGTTCTTACCCAAGGAAAAGTAACAAATTATAGAATTTCCCAAAAGATGTTTTGATCCTACTAGTAGTATGCAGTGAAAATCTTTAGAACTAAATAATTTGGACAAGGCTTAATTTAGGCATTTCCCTCTTGACCTCCTAATGGAGAGGGATTGAAAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168743-'38-49,'38-48,39-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.172 C2=0.018
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(73.9=100)
A:
PF0062918=MAM=FE(2.9=100)
C2:
PF0062918=MAM=PD(13.2=22.0)
Main Inclusion Isoform:
ENST00000305572fB21332
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGGCTGACATCAAGAGC
R:
CCAGGCTCAATAATCCCAGTTCC
Band lengths:
98-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains