BtaEX0024886 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001864 | NR4A3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:HGNC Symbol;Acc:HGNC:7982]
Coordinates
chr8:65338254-65341300:+
Coord C1 exon
chr8:65338254-65338354
Coord A exon
chr8:65339423-65339494
Coord C2 exon
chr8:65341200-65341300
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATCACTGCTTCTTCCAACAGGCC
3' ss Score
11.06
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CGCAGCCACTTCACCCAGCCGGACGTCCCCGCCTCCTCCACTCTCGGCCTCCGCTGGAGAGACCCCCAGCCCCACCATTCAGCGCGCAAGATACCCTCCAG
Seq A exon
GCCCTCAACACCTTTTTTCAAGTCAAGATTTCATCCCATACATGTATGACTCAATCAGATTTGGAAATGTGG
Seq C2 exon
ATATGCCCTGCGTGCAAGCCCAGTATAGCCCTTCACCGCCAGGTTCCAGTTATGCAGCACAAACATATGGCTCGGATTACACCACGGAGATCATGAATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001864-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCCACTTCACCCAG
R:
CGAGCCATATGTTTGTGCTGC
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development