RnoEX0060875 @ rn6
Exon Skipping
Gene
ENSRNOG00000005964 | Nr4a3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:RGD Symbol;Acc:61882]
Coordinates
chr5:63785548-63788780:+
Coord C1 exon
chr5:63785548-63785727
Coord A exon
chr5:63786497-63786568
Coord C2 exon
chr5:63787822-63788780
Length
72 bp
Sequences
Splice sites
3' ss Seq
AACACTGCTTCTTCCAACAGGCC
3' ss Score
10.61
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
AGCCCACTGCGGGAGAGCGCAGCCCGACAAGCCCGGGCGCTGAGCCTGGACCCTCAACAGAGCGGGCCAGCACAGCGGCGGCGGCTGCTTCGCCTATCCCGACGTCCCCGCCTCCTACACTCTCAGCCTCCGCTGGAGAGACCCCCAGCCCCACCATTCAGCGCGCAAGATACCCTCCAG
Seq A exon
GCCCTCAGCACCTTTTTTCACGTCAAGATTTCATCCCATACACGCATGACTCAATCAGCTTTGGAAATGTGG
Seq C2 exon
ATATGCCCTGCGTGCAAGCCCAATATAGCCCTTCGCCTCCGGGGTCCACTTATGCCACGCAGACTTATGGCTCGGAATACACCACAGAAATCATGAACCCCGACTATGCCAAGCTGACCATGGACCTCGGTAGCACGGGGATCATGGCCACGGCCACGACGTCCCTGCCCAGCTTCAGTACCTTCATGGAGGGCTACCCCAGCAGCTGCGAACTCAAGCCCTCCTGCCTGTACCAAATGCCGCCTTCTGGGCCTCGGCCTTTGATCAAGATGGAAGAGGGTCGCGAGCATGGCTACCACCACCACCACCACCATCACCATCATCATCACCACCACCACCAGCAGCAGCAGCCGTCCATTCCTCCTCCCTCTGGCCCCGAGGACGAGGTACTGCCCAGCACCTCCATGTACTTCAAGCAGTCTCCGCCGTCTACGCCGACCACTCCAGGCTTCCCCCCGCAGGCGGGGGCGCTGTGGGACGACGAGCTGCCCTCTGCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005964_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.555
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0253517=Zip=WD(100=34.8),PF0010513=zf-C4=PU(38.6=8.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTACACTCTCAGCCTCC
R:
TGGCATAGTCGGGGTTCATGA
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]