MmuEX0032286 @ mm10
Exon Skipping
Gene
ENSMUSG00000028341 | Nr4a3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:MGI Symbol;Acc:MGI:1352457]
Coordinates
chr4:48048952-48052201:+
Coord C1 exon
chr4:48048952-48049128
Coord A exon
chr4:48049934-48050005
Coord C2 exon
chr4:48051246-48052201
Length
72 bp
Sequences
Splice sites
3' ss Seq
AATGCTGCTTCTTCCAACAGGCC
3' ss Score
10.78
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
AGCCCACTGCGGGAGAGCGCAGCCCGACAAGCCCGGGCGCTGAGCCTGGACCCTCAGCAGAGCGGGCCAGCACAGCGGCTGCTGCTTCGCCTATCCCGACGTCCCCGCCTCCTACACTCTCAGCCTCCGCTGGAGAGACCCCCAGCCCCACCATTCAGCGCGCAAGATACCCTCCAG
Seq A exon
GCCCTCAGCACCTTTTTTCACGTCAAGATCTCATCCCATACACGCATGACTCAATCAGCTTTGGAAATGTGG
Seq C2 exon
ATATGCCCTGCGTGCAAGCCCAGTATAGCCCTTCACCTCCGGGGTCCACTTACGCCACGCAGACTTATGGCTCGGAATACACCACAGAAATCATGAACCCCGACTACACCAAGCTGACCATGGACCTCGGTAGCACGGGGATCATGGCCACCGCCACTACATCCCTGCCCAGCTTCAGTACCTTCATGGAGGGCTACCCCAGCAGCTGCGAACTCAAGCCCTCCTGCCTGTACCAAATGCCGCCTTCTGGGCCTCGGCCTTTGATCAAGATGGAAGAGGGTCGCGAGCATGGCTACCACCACCACCATCACCATCACCATCATCACCACCACCACCAGCAACAGCAGCCGTCCATTCCTCCTCCCTCCGGCCCCGAGGACGAGGTACTGCCCAGCACCTCCATGTACTTCAAGCAGTCTCCGCCTTCTACACCGACCACTCCAGGCTTCCCCCCGCAGGCGGGGGCGCTGTGGGACGACGAGCTGCCCTCTGCGCCTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028341_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.167 C2=0.564
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0010513=zf-C4=PU(38.6=8.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTACACTCTCAGCCTCC
R:
TGGTGTAGTCGGGGTTCATGA
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types