BtaEX0025213 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021896 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr11:101398641-101408308:+
Coord C1 exon
chr11:101398641-101398719
Coord A exon
chr11:101401509-101401596
Coord C2 exon
chr11:101406494-101408308
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCCCCTAATTCCAGGAC
3' ss Score
10.31
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
GGATCGCTAATAAATGCCCTAAAGCCATCTGGGCCCCCGCCAGCATCCAGTCAGTTGTCATCTGGTGATAAAGCTTCAG
Seq A exon
GACCAGTGGCAACCAAGATAGAAACAGCTGTGACTTCTACCCCGTCTACTGTTGGGCAGTTCAGCAAGCCTTTCTCATTTTCATCAGG
Seq C2 exon
GGTCAGCACCCCCCACCAAAGAGTCAAGCCAGCTTGATGCGTTCTCCTTTGGCGGGGGAGGCAAGCCTTTCTATGAGACCGTTCCTGAAAGCTTACCTTCCACGGGGACGATGACATCAGGTAGCACGGGAGCAGCTGGTGCCACGCCAGGAGAGTCCGCCCCATCCAGCAGCAGACCTGCAGCCCCTTCTGGAATTTCTCTCTCCACCCCTGCTGGCAAGCTGGAGGCGCCACCGTCCAAGCTGGGTGAGCTGCTGTTCCCAAGCTCCCTGGCGGGAGAGACTCTGGGAAGTTTCTCAGGACTGCGGGTCGGCCAAGCAGACGAGCCCACCAAGCCAGCCAGCAAGGCGCCGTCCCCAGGCGTGACCAGTGCCGGTGCACAGCCCACCAAGACCCCTGCCGCCCCCTCCGGGTTCAGTTCTCCCAGCCCTGCGGCGCTGGGGAAGCCTGCAGAGCCCCCCGAGTCCACCTCTGCGGCGGCACCAACAGCAGCAGCCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021896_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.767 C2=0.820
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCATCCAGTCAGTTGTC
R:
TCCCGTGCTACCTGATGTCAT
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development