MmuEX0032771 @ mm9
Exon Skipping
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:31882368-31886828:+
Coord C1 exon
chr2:31882368-31882446
Coord A exon
chr2:31886227-31886317
Coord C2 exon
chr2:31886770-31886828
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCTTATTTTGTCCATTTCAGGTC
3' ss Score
12.49
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
GGGTCTCTGATAAATTCTTTCAAGCCGTCAGGACCCACAGCAGCATCCTGTCAGCTGTCCTCTGGGGATAAAGCTGTAG
Seq A exon
GTCAAGGGACAGCCAAGACAGAGTCCGCTGCGACCTCGACTCCATCTGCTGCAGGACAGCTCAACAAGCCTTTCTCATTCGCCTCCCCAGG
Seq C2 exon
GACCTTTACTTTTGGGACAATCACACCAACCCCATCTTCTAGTTTCACTGCCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855-'37-41,'37-39,38-41
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.806 C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCTGATAAATTCTTTCAAGCCG
R:
TGGTGTGGCAGTGAAACTAGA
Band lengths:
136-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: