RnoEX0061722 @ rn6
Exon Skipping
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11037092-11043482:+
Coord C1 exon
chr3:11037092-11037170
Coord A exon
chr3:11040740-11040827
Coord C2 exon
chr3:11043424-11043482
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCTTATTTTGTCCATTTCAGGTC
3' ss Score
12.49
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
GGGTCTCTGATAAATTCCTTCAAGCCGTCAGGACCCACACCAGTGTCCTGTCAGCTGTCCTCTGGGGATAAAGCTGTAG
Seq A exon
GTCCAGGGACGGCCAAGACAGAGTCACCTGTGACCTCCACCCCATCTACGGGGCAGCTCAACAAGCCTTTCTCATTCGCCTCCCCAGG
Seq C2 exon
GACCTTTACTTTTGGGACAATCACACCAGCCCCATCTTCTAGTTTCACTGCCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393-'25-32,'25-28,26-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=0.847 C2=0.557
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGATAAATTCCTTCAAGCCGT
R:
CTGGTGTGGCAGTGAAACTAGA
Band lengths:
135-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]