BtaEX0025418 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015291 | ORC4
Description
Bos taurus origin recognition complex, subunit 4 (ORC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001046301]
Coordinates
chr2:48351307-48368337:+
Coord C1 exon
chr2:48351307-48351458
Coord A exon
chr2:48358175-48358348
Coord C2 exon
chr2:48368251-48368337
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGGAGATTTTTGTTTTTAAGGAT
3' ss Score
6.7
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGACCGGACTAGTAGTTGCCCAGTGATCTTCATATTAGATGAATTTGATCTTTTTGCTCATCATAAAAACCAAACACTCCTCTATAACCTTCTTGACATTTCTCAGTCTGCACAGACTCCAGTAGTAATTATTGGTCTTACATGCAGATTG
Seq A exon
GATATTTTGGAACTCTTAGAAAAAAGAGTGAAGTCACGATTTTCCCACCGGCAGATACACTTAATGAATTCATTTAGTTTTCCACAGTATCTTAAAATATTTAAAGAACAATTATCTCTACCTTCGGTATTTCCAGAGGAGATTTTCGCCGAGAAATGGAATGAGAATGTACAG
Seq C2 exon
AGTCTCTCAGAAGATAGAAGTGTGAAAGAAGTGCTGCAGAAGCATTTTAATGTCAGCAAAAACCTGCGTTCATTACACATGCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015291_MULTIEX1-10/14=9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(28.4=86.3)
A:
PF146291=ORC4_C=PU(14.1=46.6)
C2:
PF146291=ORC4_C=FE(14.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGGACTAGTAGTTGCCCA
R:
CAGTAGCATGTGTAATGAACGC
Band lengths:
237-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development