DreEX6019742 @ danRer10
Exon Skipping
Gene
ENSDARG00000101161 | orc4
Description
origin recognition complex, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2224]
Coordinates
chr6:898321-900889:-
Coord C1 exon
chr6:900738-900889
Coord A exon
chr6:900439-900612
Coord C2 exon
chr6:898321-898407
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTTGTAGGAT
3' ss Score
11.99
5' ss Seq
ACGGTACAC
5' ss Score
5.08
Exon sequences
Seq C1 exon
GTGATAAGAGCAGTAGTCGTCCTGTGCTCTTCTTGCTGGATGAGTTTGATCTGTTTGCTCATCATAAGAACCAGACGCTGCTCTACAATCTGCTGGACGTTTCTCAGTCTGCGCAGACGCCTGTGGCTGTGGTCGGACTCACCTGCAGACTG
Seq A exon
GATGTGCTGGAGCTGCTGGAGAAGCGGGTGAAGTCTCGATTCTCTCACAGACAGATTCATCTCTTCAGTTCTCTCTCCTTCAGTCAGTATGTGGATGTGGTTCGACTGCAGCTCAGTTTGCCTCAGGATTTCCCAGATCACAGGTTCTCCAGCCAGTGGAACCAGAGCGTCACG
Seq C2 exon
AAACTGTGTGAAGATAAATCCGTTCTGGAGGTTTTAAAGAGAAGCTTCAACTCCAGTAAAGATTTCCGCTCTCTGTATTCGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101161-'13-12,'13-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(28.4=86.3)
A:
PF146291=ORC4_C=PU(14.1=46.6)
C2:
PF146291=ORC4_C=FE(14.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCAGTAGTCGTCCTGTG
R:
CAGCAGCGAATACAGAGAGCG
Band lengths:
234-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]