GgaEX1041350 @ galGal3
Exon Skipping
Gene
ENSGALG00000012448 | ORC4
Description
NA
Coordinates
chr7:36191253-36193556:-
Coord C1 exon
chr7:36193405-36193556
Coord A exon
chr7:36191640-36191813
Coord C2 exon
chr7:36191253-36191339
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATTATTATTATTTTCACAAGGAT
3' ss Score
3.72
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
GAGACAGAACCAGCAGCTGCCCAGTCCTGTTTGTGCTGGATGAGTTTGACTTGTTTGTGCATCACAAGAATCAGACGCTGCTGTACAACCTGTTTGATGTATCCCAGTCAGCACAGACTCCAGTAACCGTTATTGGACTCACATGCAGGCAG
Seq A exon
GATATTTTGGAGCTCTTGGAGAAGAGAGTGAAGTCGAGGTTCTCTCACCGACGGATCTATTTGATGAATTCCTTTGCTTTTAAGCAGTACATTAGGATATTCAAGGAGCAGCTTTCTCTTCCTGCTGAATTTCCTGACAAGGCTTTTGCACAGAAATGGAATAGCAACATTCAG
Seq C2 exon
CTTCTCACAGAAGACAAAACCGTGCAAGACATACTGCAGAACCTCTTTCACTACAGCAAAGATCTGCGTTCACTCAATTTCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012448-'10-14,'10-12,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(28.4=86.3)
A:
PF146291=ORC4_C=PU(14.1=46.6)
C2:
PF146291=ORC4_C=FE(14.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACAGAACCAGCAGCTGC
R:
AGCAGGAAATTGAGTGAACGCA
Band lengths:
238-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]