BtaEX0025485 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18533811-18537983:-
Coord C1 exon
chr2:18537861-18537983
Coord A exon
chr2:18534979-18535032
Coord C2 exon
chr2:18533811-18533924
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGACTGTTTGGTTGTTGCAGCGT
3' ss Score
6.11
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAAGCTGACAGCTGGGAAATTATAGAAGGACTGAAAATAGGCCAAACCAATGTCCAGAGACCAGACAAACATGAAGGTTTTATGCTAAAGAAGAGAAAATGGCCTTTAAAAGGCTGGCACAAG
Seq A exon
CGTTTTTTTGTCCTGGATAATGGAATGTTAAAGTATTCAAAGGCACCACTTGAT
Seq C2 exon
ATCCAAAAAGGGAAGGTCCATGGAAGCATCGATGTGGGACTCTCTGTCATGTCAATTAAAAAGAAAGCTCGGAGAATAGACCTTGACACAGAAGAACACATCTATCATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=36.6)
A:
PF154091=PH_8=FE(18.9=100)
C2:
PF154091=PH_8=FE(41.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGCCAAACCAATGTCCAGA
R:
CAGAGAGTCCCACATCGATGC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development