DreEX6034680 @ danRer10
Exon Skipping
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1426596-1428011:-
Coord C1 exon
chr9:1427889-1428011
Coord A exon
chr9:1427062-1427115
Coord C2 exon
chr9:1426596-1426709
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTTCTTCTCCGCAGCGT
3' ss Score
11.7
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GAGCCGGACAGTTGGGAGATCATCGAGGGTCTGAGGATTGGACAGACTCATGTGCAGCGGCCCGAGAAGCACGAAGGCTTCATGCTGAAGAAGAGGAAGTGGCCTCTGAAGGGCTGGCACAAG
Seq A exon
CGTTTCTTCGTCCTGGATAACGGCATCCTGAAGTACTCCAAATCTCCAGTCGAT
Seq C2 exon
ATTCAGAAAGGAAAGCTTCATGGCAGTATAGATGTGGGTCTGTCTGTGATGTCCATCAAGAAACGAGCTCGCCGCATCGACCTGGACACAGAGGAGCACATTTACCATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.056 C2=0.039
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=36.6)
A:
PF154091=PH_8=FE(18.9=100)
C2:
PF154091=PH_8=FE(41.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGAAGAGGAAGTGGCC
R:
CTCCTCTGTGTCCAGGTCGAT
Band lengths:
136-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]