GgaEX0013480 @ galGal3
Exon Skipping
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16557726-16562012:-
Coord C1 exon
chr7:16561890-16562012
Coord A exon
chr7:16558516-16558569
Coord C2 exon
chr7:16557726-16557839
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTCCACTTTCAGAGG
3' ss Score
10.8
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAGCCTGACAGCTGGGAAATCATAGAGGGTCTGAAAATTGGCCAGACCAATGTACAGAAGCCAGACAAACATGAAGGCTTCATGCTGAAAAAGAGAAAATGGCCCTTAAAAGGTTGGCACAAG
Seq A exon
AGGTTTTTCGTCCTGGATAATGGACTGTTAAAATATTCCAAGTCACCAATTGAT
Seq C2 exon
ATACAGAAGGGCAAAGTGCATGGGAGCATTGATGTGGGCTTATCAGTTATGTCCATTAAAAAGAAGGCTCGCAGAATAGATCTTGATACAGAAGAACACATTTATCATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'11-10,'11-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=36.6)
A:
PF154091=PH_8=FE(18.9=100)
C2:
PF154091=PH_8=FE(41.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTGACAGCTGGGAAATC
R:
CCATGCACTTTGCCCTTCTGT
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]