BtaEX0025576 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005365 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:HGNC:23080]
Coordinates
chr5:80553012-80564543:+
Coord C1 exon
chr5:80553012-80553113
Coord A exon
chr5:80558925-80559149
Coord C2 exon
chr5:80564418-80564543
Length
225 bp
Sequences
Splice sites
3' ss Seq
CTGTATGTTCTAAATCATAGGCT
3' ss Score
6.82
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGCAGGTCCTGTTTTACTCCAGATAAAAAATGAAAGCAAAATCTTAACAAGACAACAACTGCCACCACCCACACCCTCAAGAGACAGTGCATCTGGGCCAG
Seq A exon
GCTGTTACTCTGAAGTGGAGTTAGAAGAGCCCAGAGGCTTTTTTTCATCTCCAAGATATCCACTGGATTATAGAGGAAAACTGGAATGTTCTTGGGTCCTCCGAGTTTCACCAAGCAGTATGGCAAAATTTACAGTTGAGTATCTGTTACTCCCTTGGTCTCATATGTGTCAAGATTCAGCTCTGATTATTTATGAAGAAAACCACAGTGAGAGAAGGATGTCAG
Seq C2 exon
GTAAATTATGCGGAAGAAGGCTTTATCCAATGGTTTTCATGAGCTCTGGACCACTGGTGAGGGTGACATTTCATTCCAGTGTGCAAGGTGCTTTTGGCATAAATTATATTGTCTTTAGAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005365_MULTIEX1-2/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(67.3=97.4)
C2:
PF0043115=CUB=PD(31.8=81.4)
Main Skipping Isoform:
ENSBTAT00000007060fB4939
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGTCCTGTTTTACTCCA
R:
GCACCTTGCACACTGGAATGA
Band lengths:
192-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development