HsaEX6065737 @ hg19
Exon Skipping
Gene
ENSG00000187950 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:23080]
Coordinates
chr12:29598211-29607866:-
Coord C1 exon
chr12:29607774-29607866
Coord A exon
chr12:29604278-29604502
Coord C2 exon
chr12:29598211-29598336
Length
225 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTTCTGAATTGCAGGTT
3' ss Score
10.5
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTCCTGCTTCACTTCAGACAAATAATAAATGCAAAACCTTAAAACAACAATTGCCACCACCCACACCTTCACCAGACAGTGCATCTTGGCCAG
Seq A exon
GTTGTTGCTCTGAAGCAGAGCTAGAAAAGCCTAGAGGCTTTTTTCCCACACCACGGTATCTACTGGATTATAGAGGAAGACTGGAATGTTCTTGGGTGCTCAGAGTTTCAGCAAGCAGTATGGCAAAATTTACCATTGAGTATCTGTCACTCCTGGGGTCTCCTGTGTGTCAAGACTCAGTTCTAATTATTTATGAAGAAAGACACAGTAAGAGAAAGACGGCAG
Seq C2 exon
GTGGATTACATGGAAGAAGACTTTACTCAATGACTTTCATGAGTCCTGGACCGCTGGTGAGGGTGACATTCCATGCCCTTGTACGAGGTGCATTTGGTATAAGCTATATTGTCTTGAAAGTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187950-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(67.0=96.1)
C2:
PF0043115=CUB=PD(32.1=81.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGCTTCACTTCAGACAA
R:
ACAATATAGCTTATACCAAATGCACC
Band lengths:
205-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)