HsaEX6065737 @ hg38
Exon Skipping
Gene
ENSG00000187950 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:HGNC:23080]
Coordinates
chr12:29445278-29454933:-
Coord C1 exon
chr12:29454841-29454933
Coord A exon
chr12:29451345-29451569
Coord C2 exon
chr12:29445278-29445403
Length
225 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTTCTGAATTGCAGGTT
3' ss Score
10.5
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTCCTGCTTCACTTCAGACAAATAATAAATGCAAAACCTTAAAACAACAATTGCCACCACCCACACCTTCACCAGACAGTGCATCTTGGCCAG
Seq A exon
GTTGTTGCTCTGAAGCAGAGCTAGAAAAGCCTAGAGGCTTTTTTCCCACACCACGGTATCTACTGGATTATAGAGGAAGACTGGAATGTTCTTGGGTGCTCAGAGTTTCAGCAAGCAGTATGGCAAAATTTACCATTGAGTATCTGTCACTCCTGGGGTCTCCTGTGTGTCAAGACTCAGTTCTAATTATTTATGAAGAAAGACACAGTAAGAGAAAGACGGCAG
Seq C2 exon
GTGGATTACATGGAAGAAGACTTTACTCAATGACTTTCATGAGTCCTGGACCGCTGGTGAGGGTGACATTCCATGCCCTTGTACGAGGTGCATTTGGTATAAGCTATATTGTCTTGAAAGTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187950-'27-30,'27-26,28-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(67.0=96.1)
C2:
PF0043115=CUB=PD(32.1=81.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGCTTCACTTCAGACAA
R:
ACAATATAGCTTATACCAAATGCACC
Band lengths:
205-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains