BtaEX0025679 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017125 | PABPC4
Description
Bos taurus poly(A) binding protein, cytoplasmic 4 (inducible form) (PABPC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001083724]
Coordinates
chr3:107093053-107093980:+
Coord C1 exon
chr3:107093053-107093325
Coord A exon
chr3:107093675-107093762
Coord C2 exon
chr3:107093909-107093980
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTGGTTGCTCTTTCTTCCAGGCT
3' ss Score
9.34
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTGATGCTGGAGGATGGGAGAAGCAAAGGATTTGGCTTTGTCTGCTTCTCATCCCCTGAAGAGGCAACCAAAGCAGTCACAGAGATGAATGGACGCATCGTGGGCTCCAAGCCACTTTATGTCGCTCTGGCCCAGAGAAAGGAGGAGAGAAAGGCTCACCTGACCAACCAATATATGCAGCGGGTGGCCGGGATGAGGGCACTGCCCGCCAATGCCATCTTAAATCAGTTTCAGCCTGCAGCTGGGGGCTACTTTGTGCCAGCAGTTCCACAG
Seq A exon
GCTCAGGGAAGACCTCCATATTACACACCTAACCAGTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAG
Seq C2 exon
GCTTCCAAGGAATGCCAAGTGCTATACGCCAGTCTGGGCCTCGTCCAGCTCTTCGCCATCTGGCTCCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017125-'13-9,'13-8,15-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.867 C2=1.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(56.5=42.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTATGTCGCTCTGGCCCAG
R:
CACTTGGCATTCCTTGGAAGC
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development