DreEX0053127 @ danRer10
Exon Skipping
Gene
ENSDARG00000059259 | pabpc4
Description
poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]
Coordinates
chr17:25292669-25295019:-
Coord C1 exon
chr17:25294750-25295019
Coord A exon
chr17:25293368-25293581
Coord C2 exon
chr17:25292669-25292802
Length
214 bp
Sequences
Splice sites
3' ss Seq
TTTCAAATGCACCATCACAGGCC
3' ss Score
4.57
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GTGATGCTGGAGGAGGGCAGGTCCAAAGGTTTTGGTTTTGTGTGTTTCTCCTCTCCTGAGGAAGCCACAAAGGCTGTGACAGAGATGAATGGGCGTATTGTGGGCTCCAAACCACTATACGTAGCCCTAGCTCAACGTAAAGAAGAGCGCAAAGCTCATCTGACCAACCAGTACATGCAGCGGATTGCCGGTATGAGGGCCATGCCTGCCAATGCCATCATCAACCAGTTCCAGCCTGCCGGCGGATACTTCATGCCAGCCGTGCCACAG
Seq A exon
GCCCAGAACAGAACAACATACTATGCACCAAACCAGCTCACCCAGATGCGTCCAAACCCGCGCTGGCAGCAGCAGGGTGGCAGAGGTCAGGGTGGTTTCCAGGGCATGCCCAGCTCCTTACGCCAGCCAGGGCCCCGGGCTAACATTCGCCACCTGGCACCCAATGCTTCCAACCAAGGCCCACGCGGGATGCCCACAGGTGCACAGAGAGTGG
Seq C2 exon
GAGGGACTGGCCAACCGATGGGTCCCCGTCCTGCCATGGGGATGACGACCCCACGTGCCATGCCACCATACAAATATGCCTCCACCATCCGAAACACTCAGCCTCAGGTAGTGCAGCCCATCGCTCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059259-'8-11,'8-9,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.968 C2=0.956
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(56.5=43.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAGAGATGAATGGGCGT
R:
GAGGCTGAGTGTTTCGGATGG
Band lengths:
300-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]