GgaEX6025299 @ galGal3
Exon Skipping
Gene
ENSGALG00000003800 | PABPC4
Description
NA
Coordinates
chr23:5734216-5735146:-
Coord C1 exon
chr23:5734874-5735146
Coord A exon
chr23:5734507-5734594
Coord C2 exon
chr23:5734216-5734335
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTGATCTCCCTCCAGGCT
3' ss Score
9.21
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGATGCTAGAAGATGGACGGAGCAAAGGGTTTGGCTTTGTCTGCTTTTCCTCTCCAGAGGAAGCTACGAAGGCTGTGACAGAGATGAATGGTCGAATAGTGGGCTCTAAGCCACTCTATGTTGCACTTGCACAAAGGAAAGAAGAGCGAAAGGCTCATCTAACTAATCAGTACATGCAGCGCATTGCTGGGATGAGAGCCTTGCCAGCCAACACAATCATTAATCAGTTCCAGCCTGCTGCTGGCGGTTATTTCATGCCTGCTGTGCCCCAG
Seq A exon
GCTCAGAGCAGACCCACTTACTATGCACCCAATCAGATGGCACAGATGAGACCCAACCCACGCTGGCAGCAAGGGGGAAGACCTCAAG
Seq C2 exon
GCTTCCAGGGAATGCCAAATGCCATGCGCCAGTCTGGACCACGGCCAGCGCTGCGCCATCTGGCCCCTGCTGGCACTGCTCCTGCCTCTCGTGGCCTCCCTGTTTCTGCCCAGCGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003800-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.867 C2=1.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(56.5=42.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATCAGTTCCAGCCTGCTGC
R:
CAACTCGCTGGGCAGAAACAG
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]