BtaEX0026486 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006529 | PDSS1
Description
Bos taurus prenyl (decaprenyl) diphosphate synthase, subunit 1 (PDSS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100331]
Coordinates
chr13:18186426-18192025:-
Coord C1 exon
chr13:18191945-18192025
Coord A exon
chr13:18191737-18191850
Coord C2 exon
chr13:18186426-18186506
Length
114 bp
Sequences
Splice sites
3' ss Seq
AGCCCTTTCTTCCTCTCCAGCTG
3' ss Score
10.2
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTCTCTGTCCTGGGATGCCCTGACCCAGCGGTGCATGAGATTGCCTATCAGTATGGGAAGAACGTGGGCATCGCTTTTCAG
Seq A exon
CTGATAGACGACGTCCTGGACTTCACCTCGTGTTCTGAACAGATGGGCAAACCGACTTCAGCTGACCTGAAGCTTGGGTTAGCCACTGGCCCCGTCTTATTTGCATGTCAGCAG
Seq C2 exon
TTCCCAGAAATGAATGCTATGATAATGAGACGGTTCGGTTCACCAGGAGACGTGGACAGAGCGCTACAGTACGTATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006529_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(9.9=100)
A:
PF0034812=polyprenyl_synt=FE(14.1=100)
C2:
PF0034812=polyprenyl_synt=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTGTCCTGGGATGCCC
R:
CTGTAATACGTACTGTAGCGCTCT
Band lengths:
162-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development