HsaEX1027603 @ hg38
Exon Skipping
Gene
ENSG00000148459 | PDSS1
Description
decaprenyl diphosphate synthase subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
Coordinates
chr10:26735240-26742577:+
Coord C1 exon
chr10:26735240-26735320
Coord A exon
chr10:26735466-26735579
Coord C2 exon
chr10:26742497-26742577
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCATTTTTCCTTTTGCCAGCTA
3' ss Score
7.27
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTCTCTGTTCTAGGATGTCCCGACCCAGTGGTGCATGAGATCGCCTATCAGTACGGAAAAAATGTAGGAATAGCTTTTCAG
Seq A exon
CTAATAGATGATGTATTGGACTTCACCTCGTGTTCTGACCAGATGGGCAAACCAACATCAGCTGATCTGAAGCTCGGGTTAGCCACTGGTCCTGTCCTGTTTGCCTGTCAGCAG
Seq C2 exon
TTCCCAGAAATGAATGCTATGATCATGCGACGGTTCAGTTTGCCTGGAGATGTAGACAGAGCTCGACAGTATGTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148459-'24-21,'24-17,25-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(10.3=100)
A:
PF0034812=polyprenyl_synt=FE(14.1=100)
C2:
PF0034812=polyprenyl_synt=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTGTTCTAGGATGTCCCGA
R:
CTGTAGTACATACTGTCGAGCTCTG
Band lengths:
162-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains