BtaEX0026776 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015976 | PHF12
Description
PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
Coordinates
chr19:20840687-20842797:-
Coord C1 exon
chr19:20842002-20842797
Coord A exon
chr19:20840864-20840960
Coord C2 exon
chr19:20840687-20840812
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCCTCACCACACGTTTTTAGCTC
3' ss Score
5.14
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
Exon sequences
Seq C1 exon
GAAAGCCCCCTGTGGGACTGCCAACGGGCCGGTGAACACAGAGGTGAAAGCCAATGGCCCACACCTCTACAGCAGCCCCACTGATTCCACGGACCCCCGGCGACTTCCAGGCGCCAACACCCCCCTACCCGGCCTCTCACACCGGCAAGGCTGGCCCCGGCCCCTCACGCCACCAGCGGCTGGGGGGCTTCCGAACCACACCGTCGGCATCATTGTGAAGACAGAGAATGCCACTGGCCCCAGCTCTTGCCCCCAGAGGAGTGTGGGTCTTGTCCCAAGCCTACCCCCTTCCGTTCCCAGCTCTTGTGCCAGCATCGAGAACACCAGCACTTTGCAAAGAAAGACTGTCCAATCCCAGATAGGACCTCCGTTGACAGATTCAAGGCCACTGGGCTCACCCCCAAATGCCACCCGGGTGCTCACTCCCCCCCAAGCAGCAGGTGATGGTATCTTGGCCACAGGAGCCAATCAACGATTCTGCTCACCAGCGCCGTCATCAG
Seq A exon
CTCTAGGAGTTCCAGAGCCTATGGGGTGAGGATCAAGAAGGGAACATCACCTTGGGCCCGAAATCCAGGCCTGTCTCTGCAGTGGGGGATTGGACCG
Seq C2 exon
ATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGGACCTCACCAACTCACTTCGAGCATTCATGGATGTCAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015976_MULTIEX1-3/8=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=1.000 C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000021255fB5182
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGATTCAAGGCCACTGGG
R:
GGTACGGTTAAAGCGCTTCCT
Band lengths:
180-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development