Special

RnoEX0065296 @ rn6

Exon Skipping

Gene
Description
PHD finger protein 12 [Source:RGD Symbol;Acc:1305731]
Coordinates
chr10:64820653-64822637:-
Coord C1 exon
chr10:64821842-64822637
Coord A exon
chr10:64820810-64820926
Coord C2 exon
chr10:64820653-64820778
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCTCACCACACGTTTTTAGCTC
3' ss Score
5.14
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GAAAGCCCCTTGTGGGACTGCCAATGGGCCAGTGAACACAGAGGTAAAAGCCAATGGCCCACACCTCTACAGCAGCCCCACTGATTCCTCGGATCCCCGGCGACTCCCTGGCGCCAACACCCCTTTACCGGGCCTCACTCACCGGCAAGGCTGGCCCCGGCCCCTCACACCACCATCGGCTGGGGGTCTTCAGAACCACGCCGTCGGCATCATTGTGAAGACAGAAAATGCCACTGGCCCCAGCTCTTGTCCCCAGAGGAGTTTGGTACCTGTCCCAAGCCTGCCCCCTTCCATTCCCAGCTCTTGTGCCAGCATCGAGAACACCAGCACTTTGCATAGAAAGACTGTCCAATCACAGATAGGACCTTCGTTGACAGAATCGAGGCCTCTGGGCTCACCCCCAAATGCCACCCGGGTGCTCACTCCCCCCCAAGCTGCAGGAGACAGTATCTTGGCCACAGGCGCCAACCAACGATTCTGCTCACCAGCGCCATCATCAG
Seq A exon
CTCTAGGAGTTCCAGAGCCTGTGGGTTGAGAATCAAGAAGGGAACATCACCTTGGGTCCGAAATCCAGAACTGTCTCAACAATGGGGGATTGGACCGGTGGGTTTCCCTCAGGCGAC
Seq C2 exon
ATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGGACCTCACCAACTCACTTCGAGCATTTATGGATGTCAGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009566_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.816 A=1.000 C2=0.267
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:
ENSRNOT00000056234fB10592


Main Skipping Isoform:


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGTGCCAGCATCGAGAAC
R:
GGTACGGTTAAAGCGCTTCCT
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]